A ce jour, je suis auteur ou co-auteur de 26 articles (Google Scholar: > 550 citations, h-index 15 / Web of Science: > 340 citations, h-index 12) dans des journaux scientifiques internationaux à comité de relecture.

So far, I have authored or co-authored 26 articles (Google Scholar: > 550 citations, h-index 15  / Web of Science: > 340 citations, h-index 12) in peer-reviewed international scientific journals. 

 

Articles

Preprints

Gibert A., Schatz B., Buscail R., Nguyen D., Baguette M., Barthes N. & Bertrand J.A.M. (2024) Floral phenotypic divergence and genomic insights in an Ophrys orchid: Unraveling early speciation processes. Preprint sur bioRxiv (Lien). DOI:10.1101/2024.03.21.586062

Russo A., Alessandrini M., El Baidouri M., Frei D, Galise T.R., Gaidusch L., Oertel H.F., Garcia Morales S.E., Potente G., Tian Q., Smetanin D., Bertrand J.A.M., Onstein R.E., Panaud O., Frey J.E.,  Cozzolino S., Wicker T., Xu S., Grossniklaus U., & Schlüter P.M. (2023) The genome of the early spider-orchid Ophrys sphegodes provides insights into sexual deception and adaptation to pollinators. Preprint sur Research Square (Lien). DOI:10.21203/rs.3.rs-3463148/v1

Schmid S., Bachmann Salvy M., Garcia Jimenez A., Bertrand J.A.M., Cortesi F., Heim S., Huyghe F., Litsios G., Marcionetti A., O’Donnell J., Riginos C., Tettamanti V. & Salamin N. (2023) Gene flow throughout the evolutionary history of a polymorphic and generalist clownfish. Preprint sur bioRxiv (Lien). DOI:10.1101/2023/10.19.563036

Gibert A., Buscail R. Baguette M., Fraïsse C., Roux C., Schatz B. & Bertrand J.A.M. (2023) Holocene climate change promoted allopatric divergence and disjunct geographic distribution in a bee orchid species. Preprint sur bioRxiv (Lien). DOI:10.1101/2023/04.27.538532

2024

Marcionetti A*., Bertrand J.A.M.*, Cortesi F., Donati G.F.A., Heim, S., Huyghe F., Kochzius M., Pelissier L. & Salamin N. (2024) Recurrent gene flow events occurred during the diversification of clownfishes of the skunk complex. Molecular Ecology, Sous-presse. DOI:10.1111/mec.17347 (Lien)

2022

Gibert A., Louty F., Buscail R., Baguette M., Schatz B. & Bertrand J.A.M. (2022) Extracting quantitative information from images taken in the wild: a case study of two vicariants in the Ophrys aveyronensis species complex. Diversity, 14, 400. DOI:10.3390/d14050400 (Lien)

Salvado P., Llauro C., Carpentier M.-C., Delorme-Hinoux V. & Bertrand J.A.M. (2022) Characterization of the complete plastome of Delphinium montanum, a polyploid, endemic and endangered Pyrenean Larkspur. Mitochondrial DNA Part B, 7, 590-592. DOI: 10.1080/23802359.2022.2057248 (Lien)

Salvado P., Aymerich Boixader P., Parera J., Vila Bonfill A., Martin M., Quélennec C., Lewin J.-M., Delorme-Hinoux V. & Bertrand J.A.M. (2022) Little hope for the polyploid endemic Pyrenean Larkspur (Delphinium montanum): evidences from population genomics and Ecological Niche Modelling. Ecology & Evolution, 12, e8711. DOI: 10.1002/ece3.8711 (Lien)

2021

Bertrand J.A.M., Gibert A., Llauro C. & Panaud O. (2021) Whole plastid genome-based phylogenomics supports an inner placement of the O. insectifera group rather than a basal position in the rapidly diversifying Ophrys genus (Orchidaceae). Botany Letters, 168, 452-457. DOI: 10.1080/23818107.2021.1893216 (Lien). Preprint sur bioRxiv. DOI: 10.1101/2020.12.16.423003 (Lien)

2020

Baguette M., Bertrand J.A.M., Stevens V. & Schatz B. (2020) Why are there so many Bee-orchids? Adaptive radiation by intraspecific competition for mnemonic pollinators. Biological Reviews, 95, 1630-1663. DOI: 10.1111/brv12633 (Lien)

Bourgeois Y.X.C., Bertrand J.A.M., Delahaie B., Holota H., Thébaud C. & Milá B. (2020) Differential divergence in autosomes and sex chromosomes is associated with intra-island diversification at a very small spatial scale in a songbird lineage. Molecular Ecology, 29, 1137-1153. DOI:10.1111/mec.15396 (Lien)

2019

Bertrand J.A.M., Gibert A., Llauro C. & Panaud O. (2019). Characterization of the complete plastome of Ophrys aveyronensis, a Euro-Mediterranean orchid with an intriguing disjunct geographic distribution. Mitochondrial DNA Part B, 4, 3256-3257. DOI:10.1080/23802359.2019.1670748 (Lien)

Lavoué S., Bertrand J.A.M., Shen K.-N., Ratmuangkhwang S., Sado T., Miya M. & Mood Nor S.A (2019). Deep genetic differentiation between two morphologically similar species of wolf herrings (Teleostei, Clupeoidei, Chirocentridae). Journal of Applied Ichtyology, 35, 693-700. DOI: 10.1111/jai.13886 (Lien)

2018

Marcionetti A., Rossier V., Bertrand J.A.M., Litsios G. & Salamin N. (2018) First draft genome assembly of an iconic clownfish species (Amphiprion frenatus). Molecular Ecology Resources, 18, 1092-1101. DOI: 10.1111/1755-0998.12772 (Lien)

2017

Delahaie B., Cornuault J., Masson C., Bertrand J.A.M., Bourgeois Y.X.C., Milá B. & Thébaud C. (2017) Narrow hybrid zones in spite of very low population differentiation in neutral markers in an island bird species complex. Journal of Evolutionary Biology, 30, 2132-2145. DOI: 10.1111/jeb.13177 (Lien)

Lavoué S., Bertrand J.A.M., Wuang H.-Y., Chen W.-J., Ho H.-C. H., Motomura H., Hata H., Sado T. & Miya M. (2017) Molecular systematics of the anchovy genus Encrasicholina in the Northwest Pacific. PLoS ONE, 12: e0181329. DOI: 10.1371/journal.pone.0181329 (Lien)

Bertrand J.A.M., Borsa P. & Chen W.-J. (2017) Phylogeography of the sergeants Abudefduf sexfasciatus and A. vaigiensis reveals complex introgression patterns between two widespread and sympatric Indo-West Pacific reef fishes. Molecular Ecology, 26, 2527-2542. DOI: 10.1111/mec.14044 (Lien) 

Lavoué S., Bertrand J.A.M., Chen W.-J., Ho H.-C.H., Motomura H., Sado T. & Miya M. (2017) Phylogenetic position of the rainbow sardine Dussumieria (Dussumieriidae) and its bearing on the early evolution of the Clupeoidei. Gene, 623, 41-47. DOI: 10.1016/j.gene.2017.04.032 (Lien)

Bourgeois Y.X.C, Delahaie B., Gautier M., Lhuillier E., Malé P.-J.G., Bertrand J.A.M., Cornuault J., Wakamatsu K., Bouchez O., Mould C., Bruxaux J., Holota H., Milá B. & Thébaud C. (2017) A novel locus on chromosome 1 underlies the evolution of a melanic plumage polymorphism in a wild songbird. Royal Society Open Science. 4: 160805. DOI: 10.1098/rsos.16085. (Lien)

2016

Bourgeois Y.X.C., Bertrand J.A.M., Delahaie B., Cornuault J., Duval T., Milá B. & Thébaud C. (2016) Candidate gene analysis suggests untapped genetic complexity in melanin-based pigmentation in birds. Journal of Heredity, 107, 327-335. DOI: 10.1093/jhered/esw017. (Lien)

Bertrand J.A.M.*, Delahaie B.*, Bourgeois Y.X.C., Duval T., García-Jiménez R., Cornuault J., Pujol B., Thébaud C. & Milá B. (2016) The role of selection and historical factors in driving population differentiation along an elevational gradient in an island bird. Journal of Evolutionary Biology, 29, 824-836. DOI: 10.1111/jeb.12829. (Lien)

Chen C.-J., Shikina S., Chen W.-J., Chung Y.-J., Chiu Y.-L., Bertrand J.A.M., Lee Y.-H. & Chang C.-F. (2016) A novel female-specific and sexual reproduction-associated Dmrt gene discovered in the stony coral, Euphyllia ancora (Cnidaria, Anthozoa). Biology of Reproduction, 94, e40. DOI:10.1095/biolreprod.115.133173. (Lien)

Bertrand J.A.M.*, Bourgeois Y.X.C.* & Thébaud C. (2016) Population density of the Réunion Grey White-eye (Zosterops borbonicus) within the summit ecosystems of Réunion (Mascarene Islands). Ostrich, 87, 85-88. DOI: 10.2989/00306525.2015.1080198. (Lien)

Besnard G., Bertrand J.A.M., Delahaie B., Bourgeois Y.X.C., Lhuilier E. & Thébaud C. (2016) Valuing museum specimens: high-throughput DNA sequencing using historical collections of New Guinea crowned pigeons (Goura). Biological Journal of the Linnean Society, 117, 71-82. DOI: 10.1111/bij.12494. (Lien)

2015

Cornuault J.*, Delahaie B.*, Bertrand J.A.M., Bourgeois Y.X.C., Milá B., Heeb P. & Thébaud C. (2015) Morphological and plumage colour variation in the Réunion Grey White-eye (Aves: Zosterops borbonicus): assessing the role of selection. Biological Journal of the Linnean Society, 114, 469-473. DOI: 10.1111/bij.12428. (Lien)

2014

Bertrand J.A.M., Bourgeois Y.X.C., Delahaie B., Duval T., García-Jiménez R., Cornuault J., Heeb P., Milá B., Pujol B. & Thébaud C. (2014) Extremely reduced dispersal and gene flow in an island bird. Heredity, 112, 190-196. DOI:10.1038/hdy.2013.91. (Lien)

2013

Cornuault J., Warren B.H., Bertrand J.A.M., Milá B., Thébaud C. & Heeb P. (2013) Timing and number of colonizations but not diversification rates affect diversity patterns in hemosporidian lineages on a remote oceanic archipelago. The American Naturalist, 182, 820-833. DOI:10.1086/673724. (Lien)

Bourgeois Y.X.C., Lhuilier E., Cézard T., Bertrand J.A.M., Delahaie B., Cornuault J., Duval T., Bouchez O., Milá B. & Thébaud C. (2013) Mass production of SNP markers in a non-model passerine bird species through RAD-sequencing and contig mapping to the zebra finch genome. Molecular Ecology Resources, 13, 899-907. DOI: 10.1111/1755-0998.12137. (Lien)

2012

Bourgeois Y.X.C., Bertrand J.A.M., Thébaud C. & Milá B. (2012) Investigating the role of the Melanocortin-1 receptor gene in an extreme case of microgeographical variation in the pattern of melanin-based plumage pigmentation. PLoS ONE, 7: e50906. DOI : 10.1371/journal.pone.0050906. (Lien)

Bertrand J.A.M., García-Jiménez R., Bourgeois Y., Duval T., Heeb P., Thébaud C. & Milá B. (2012)  Isolation and characterization of twelve polymorphic microsatellite loci for investigating an extreme case of microgeographical variation in an island bird (Zosterops borbonicus). Conservation Genetics Resources, 4, 323-226. DOI : 10.1007/s12686-011-9538-9. (Lien)

* indique des co-premiers auteurs / indicates first co-authors

Chapitre d’ouvrages

2021

Bertrand J., Baguette M., Joffard N. & Schatz B. (2021) Les défis inhérents à la systématique et à la taxonomie de genres ayant connu une radiation explosive récente: le cas des orchidées du genre Ophrys. Dans Systématique et exploration du vivant (eds. M.-C. Maurel & P. Grandcolas). ISTE, Paris, pp 115-135. (Lien)

Bertrand J., Baguette M., Joffard N. & Schatz B. (2021) Challenges Inherent in the Systematics and Taxonomy of Genera that have Recently Experienced Explosive Radiation: The Case of Orchids of the Genus Ophrys. In Systematics and the Exploration of Life. (eds. M.-C. Maurel & P. Grandcolas). ISTE/(Wiley), Paris, pp 113-134. (Lien)

Autres publications

2022

Bertrand J. (2022) De la recherche fondamentale sur les bases génomiques de la diversification du vivant à des initiatives appliquées de gestion de la biodiversité: contribution au développement d’approches plus intégratives. Mémoire d’Habilitation à Diriger des Recherches. Université de Perpignan Via Domitia, France.

2013

Bertrand J. (2013) Causes de la différenciation génétique à une très petite échelle spatiale chez un oiseau insulaire (Zosterops borbonicus). Thèse de doctorat. Université Paul Sabatier Toulouse III, France.

2009

Bertrand J. (2009) Approche phylogéographique de la dispersion la diversification du clade Zosterops maderaspatanus dans le sud-ouest de l’Océan Indien. Rapport de master. Université Paul Sabatier Toulouse III, France.

Communications orales

Bertrand J. (2015) On island biogeography: from above and below the sea level – Institute of Oceanography, National Taiwan University – Taipei, Taiwan (invited seminar)

Bertrand J. (2014) Causes of evolutionary divergence in an island bird – Institute of Oceanography, National Taiwan University – Taipei, Taiwan (invited seminar)

Bertrand J., Pujol B. & Thébaud C. (2011) Différenciation phénotypique et génétique à fine échelle spatiale chez le Zostérops des Mascareignes sur l’île de la Réunion – Journée de l’école doctorale SEVAB – Toulouse, France – (conference. Awarded as the best oral presentation by both Panel and Audience)

Bertrand J., Bourgeois Y., Duval T., Milá B., Pujol B. & Thébaud C. (2011) Diversification évolutive le long d’un gradient altitudinal chez le Zostérops des Mascareignes. 33ème Réunion annuelle du groupe de biologie et génétique des populations (Petit Pois Déridé) – Toulouse, France – (conference)

Bourgeois Y., Bertrand J., Milá B. & Thébaud C. (2011) Genetic mechanisms driving to melanic polymorphism in an island bird. Journée d’Écologie de Toulouse 2011 – Toulouse, France (conference)

Posters

Vandenabeele L., Philippe H. & Bertrand J. (2024) Phylotranscriptomics to tease apart introgression for incomplete lineage sorting in the diversification of the Ophrys orchid genus. Rencontres Alphy 2024: Génomique évolutive, Bioinformatique, Alignement et Phylogénie -Montpellier, France

Bertrand J.A.M., Marcionetti A., Litsios G. & Salamin N. (2018)  No genomic evidence of hybridization between two closely related clownfish (Amphiprioninae) species. Evolution 2018, Second Joint Congress on Evolutionary Biology – Montpellier, France

Marcionetti A., Rossier V., Bertrand J.A.M. & Salamin S. (2017) Investigating the genetic basis of clownfish adaptive radiation using comparative genomics. Basel Computational Biology Conference [BC²] – Basel, Switzerland

Milá B , Bourgeois Y.X.C., Bertrand J.A.M., Delahaie B. & Thébaud C. (2013) Inter- and intra-island speciation in a tropical passerine bird : inference from genetic, genomic and ecomorphological data. 4th Meeting of the Spanish Society for Evolutionary Biology (SESBE) – Barcelona, Spain

Bertrand J.A.M., Bourgeois Y.X.C., Duval T., García-Jiménez R., Cornuault J., Milá B. & Thébaud C. (2012)  Selection-constrained dispersal drives fine-scale genetic differentiation in an island bird (Zosterops borbonicus). Evolution 2012, First Joint Congress on Evolutionary Biology – Ottawa, Canada

Bourgeois Y.X.C., Bertrand J.A.M., Milá B. & Thébaud C. (2012) Genetic mechanisms driving to melanic polymorphism in an island bird[/tp]. Evolution 2012, First Joint Congress on Evolutionary Biology – Ottawa, Canada

Delahaie B., Bertrand J., Duval T., Milá B., Heeb P. & Thébaud C. (2011) Variations clinales phénotypiques le long de gradients environnementaux : le cas d’une zone hybride cryptique chez un oiseau insulaire. 33ème Réunion annuelle du groupe de biologie et génétique des populations (Petit Pois Déridé) – Toulouse, France

Milá B., Bertrand J., Delahaie B. & Thébaud C. (2011) Potential roles for natural and sexual selection in two avian radiations : the Juncos of North America and the gray white-eye of Reunion Island. 13st Congress of the European Society for Evolutionary Biology (ESEB) – Tübingen, Germany

Bertrand J., Goodman S.M., Raherilalao M.J., Warren B.H., Heeb P. & Thébaud C. (2009) Phylogeographic study of the dispersion and the diversification of the Zosterops maderaspatanus clade in the Southwestern Indian Ocean. 31ème Réunion annuelle du groupe de biologie et génétique des populations (Petit Pois Déridé) – Grenoble, France